Sorry everyone, I havn't been able do anything with Maya last week. I should be able to do some more work on the ninja sometime in the next 2 or 3 days. Because of the lost time, I'm planning on using nCloth for the pants instead of modeling the pants and all the wrinkles. I want to learn nCloth anyway so this is a good enough time as any to learn.

Instead of making a copy of the legs to use as the base mesh of the cloth I'm going to stitch my own clothes.